Search API Docs -- http://members.orcid.org/api/tutorial-searching-api-12-and-earlier
In [2]:
import json
import sharepa
import requests
from lxml import etree
In [3]:
search_base = 'http://pub.orcid.org/v1.2/search/orcid-bio?q='
In [10]:
allthings = requests.get(search_base+'orcid :*', headers={'Accept': 'application/orcid+json'}).json()
In [11]:
allthings
Out[11]:
{u'error-desc': {u'value': u'Error when attempting to retrieve stream for orcid 0000-0001-6217-7942; nested exception is org.apache.solr.client.solrj.impl.HttpSolrServer$RemoteSolrException: Server at http://solr.solr-1-loc.orcid.org:8080 returned non ok status:500, message:Internal Server Error'},
u'message-version': u'1.2',
u'orcid-profile': None,
u'orcid-search-results': None}
In [7]:
pubmed_results = 'https://osf.io/api/v1/share/search/?q=shareProperties.source:pubmedcentral&sort=providerUpdatedDateTime'
In [47]:
pmid_search = search_base + 'pmid:'
In [48]:
all_results = requests.get(pubmed_results).json()['results']
In [49]:
pubmed_ids = []
for result in all_results:
for prop in result['otherProperties']:
if prop['name'] == 'identifier':
for identifier in prop['properties']['identifier']:
if 'nih.gov/pubmed/' in identifier:
pubmed_ids.append(identifier.replace('http://www.ncbi.nlm.nih.gov/pubmed/', ''))
In [50]:
pubmed_ids
Out[50]:
[u'23489253',
u'24003244',
u'23289887',
u'23496760',
u'24003243',
u'22977051',
u'24003211',
u'22977043',
u'23551949',
u'23989149']
In [51]:
all_results = []
for identifier in pubmed_ids:
resp = requests.get(pmid_search + identifier, headers={'Accept': 'application/orcid+json'}).json()
all_results.append(resp)
In [52]:
all_results
Out[52]:
[{u'error-desc': None,
u'message-version': u'1.2',
u'orcid-profile': None,
u'orcid-search-results': {u'num-found': 0, u'orcid-search-result': []}},
{u'error-desc': None,
u'message-version': u'1.2',
u'orcid-profile': None,
u'orcid-search-results': {u'num-found': 0, u'orcid-search-result': []}},
{u'error-desc': None,
u'message-version': u'1.2',
u'orcid-profile': None,
u'orcid-search-results': {u'num-found': 0, u'orcid-search-result': []}},
{u'error-desc': None,
u'message-version': u'1.2',
u'orcid-profile': None,
u'orcid-search-results': {u'num-found': 0, u'orcid-search-result': []}},
{u'error-desc': None,
u'message-version': u'1.2',
u'orcid-profile': None,
u'orcid-search-results': {u'num-found': 0, u'orcid-search-result': []}},
{u'error-desc': None,
u'message-version': u'1.2',
u'orcid-profile': None,
u'orcid-search-results': {u'num-found': 0, u'orcid-search-result': []}},
{u'error-desc': None,
u'message-version': u'1.2',
u'orcid-profile': None,
u'orcid-search-results': {u'num-found': 0, u'orcid-search-result': []}},
{u'error-desc': None,
u'message-version': u'1.2',
u'orcid-profile': None,
u'orcid-search-results': {u'num-found': 0, u'orcid-search-result': []}},
{u'error-desc': None,
u'message-version': u'1.2',
u'orcid-profile': None,
u'orcid-search-results': {u'num-found': 0, u'orcid-search-result': []}},
{u'error-desc': None,
u'message-version': u'1.2',
u'orcid-profile': None,
u'orcid-search-results': {u'num-found': 0, u'orcid-search-result': []}}]
In [39]:
sources_with_email ='https://osf.io/api/v1/share/search/?q=contributors.email:*&sort=providerUpdatedDateTime'
In [40]:
email_results = requests.get(sources_with_email).json()['results']
In [42]:
all_emails = []
for result in email_results:
for person in result['contributors']:
if person.get('email'):
all_emails.append(person['email'])
In [43]:
all_emails
Out[43]:
[u'manuela.kruger@ibot.cas.cz',
u'cline.laurenc@gmail.com',
u'smeti@marine.aegean.gr',
u'cline.laurenc@gmail.com',
u'rburton@ucsd.edu',
u'swenson@umd.edu',
u'sluepold@gmail.com',
u'meredith@csp-inc.org',
u'makitsimple@gmail.com',
u'alexandergamisch@gmx.at']
In [54]:
email_search = search_base + 'email:'
In [56]:
email_results = []
for email in all_emails:
email_results.append(requests.get(email_search + email, headers={'Accept': 'application/orcid+json'}).json())
In [57]:
email_results
Out[57]:
[{u'error-desc': None,
u'message-version': u'1.2',
u'orcid-profile': None,
u'orcid-search-results': {u'num-found': 0, u'orcid-search-result': []}},
{u'error-desc': None,
u'message-version': u'1.2',
u'orcid-profile': None,
u'orcid-search-results': {u'num-found': 0, u'orcid-search-result': []}},
{u'error-desc': None,
u'message-version': u'1.2',
u'orcid-profile': None,
u'orcid-search-results': {u'num-found': 0, u'orcid-search-result': []}},
{u'error-desc': None,
u'message-version': u'1.2',
u'orcid-profile': None,
u'orcid-search-results': {u'num-found': 0, u'orcid-search-result': []}},
{u'error-desc': None,
u'message-version': u'1.2',
u'orcid-profile': None,
u'orcid-search-results': {u'num-found': 0, u'orcid-search-result': []}},
{u'error-desc': None,
u'message-version': u'1.2',
u'orcid-profile': None,
u'orcid-search-results': {u'num-found': 0, u'orcid-search-result': []}},
{u'error-desc': None,
u'message-version': u'1.2',
u'orcid-profile': None,
u'orcid-search-results': {u'num-found': 0, u'orcid-search-result': []}},
{u'error-desc': None,
u'message-version': u'1.2',
u'orcid-profile': None,
u'orcid-search-results': {u'num-found': 0, u'orcid-search-result': []}},
{u'error-desc': None,
u'message-version': u'1.2',
u'orcid-profile': None,
u'orcid-search-results': {u'num-found': 0, u'orcid-search-result': []}},
{u'error-desc': None,
u'message-version': u'1.2',
u'orcid-profile': None,
u'orcid-search-results': {u'num-found': 0, u'orcid-search-result': []}}]
In [17]:
dateurl = 'https://pub.orcid.org/search/orcid-bio?q=profile-last-modified-date:%5B2015-05-06T00:00:00Z%20TO%20NOW%5D&rows=100'
In [18]:
dateobjects = requests.get(dateurl, headers={'Accept': 'application/orcid+json'}).json()
In [19]:
dateobjects
Out[19]:
{u'error-desc': None,
u'message-version': u'1.1',
u'orcid-profile': None,
u'orcid-search-results': {u'num-found': 623466,
u'orcid-search-result': [{u'orcid-profile': {u'client-type': None,
u'group-type': None,
u'orcid': None,
u'orcid-activities': {u'affiliations': None,
u'funding-list': None,
u'orcid-works': None},
u'orcid-bio': {u'applications': None,
u'biography': {u'value': u'Head of the Hemotherapy Section\nDept. Hemotherapy and Hemostasis\nUniversity Clinic Hospital.\nBarcelona, Spain',
u'visibility': None},
u'contact-details': None,
u'delegation': None,
u'external-identifiers': {u'external-identifier': [{u'external-id-common-name': {u'value': u'Scopus Author ID'},
u'external-id-orcid': None,
u'external-id-reference': {u'value': u'19735998600'},
u'external-id-source': {u'host': u'orcid.org',
u'path': u'0000-0002-5982-8983',
u'uri': u'http://orcid.org/0000-0002-5982-8983',
u'value': None},
u'external-id-url': {u'value': u'http://www.scopus.com/inward/authorDetails.url?authorID=19735998600&partnerID=MN8TOARS'},
u'orcid': None,
u'source': None},
{u'external-id-common-name': {u'value': u'Scopus Author ID'},
u'external-id-orcid': None,
u'external-id-reference': {u'value': u'6508259495'},
u'external-id-source': {u'host': u'orcid.org',
u'path': u'0000-0002-5982-8983',
u'uri': u'http://orcid.org/0000-0002-5982-8983',
u'value': None},
u'external-id-url': {u'value': u'http://www.scopus.com/inward/authorDetails.url?authorID=6508259495&partnerID=MN8TOARS'},
u'orcid': None,
u'source': None}],
u'visibility': None},
u'keywords': None,
u'personal-details': {u'credit-name': {u'value': u'Miguel Lozano',
u'visibility': None},
u'family-name': {u'value': u'Lozano'},
u'given-names': {u'value': u'Miguel'},
u'other-names': {u'other-name': [{u'value': u'Miguel Lozano-Molero'}],
u'visibility': None}},
u'researcher-urls': None,
u'scope': None},
u'orcid-deprecated': None,
u'orcid-history': None,
u'orcid-id': None,
u'orcid-identifier': {u'host': u'orcid.org',
u'path': u'0000-0003-2593-833X',
u'uri': u'http://orcid.org/0000-0003-2593-833X',
u'value': None},
u'orcid-internal': None,
u'orcid-preferences': None,
u'type': None},
u'relevancy-score': {u'value': 1.0}},
{u'orcid-profile': {u'client-type': None,
u'group-type': None,
u'orcid': None,
u'orcid-activities': {u'affiliations': None,
u'funding-list': None,
u'orcid-works': None},
u'orcid-bio': {u'applications': None,
u'biography': None,
u'contact-details': None,
u'delegation': None,
u'external-identifiers': {u'external-identifier': [{u'external-id-common-name': {u'value': u'ResearcherID'},
u'external-id-orcid': None,
u'external-id-reference': {u'value': u'B-1259-2015'},
u'external-id-source': {u'host': u'orcid.org',
u'path': u'0000-0001-7707-4137',
u'uri': u'http://orcid.org/0000-0001-7707-4137',
u'value': None},
u'external-id-url': {u'value': u'http://www.researcherid.com/rid/B-1259-2015'},
u'orcid': None,
u'source': None}],
u'visibility': None},
u'keywords': None,
u'personal-details': {u'credit-name': None,
u'family-name': {u'value': u'Mosnegutu'},
u'given-names': {u'value': u'Emilian'},
u'other-names': None},
u'researcher-urls': None,
u'scope': None},
u'orcid-deprecated': None,
u'orcid-history': None,
u'orcid-id': None,
u'orcid-identifier': {u'host': u'orcid.org',
u'path': u'0000-0003-1457-7022',
u'uri': u'http://orcid.org/0000-0003-1457-7022',
u'value': None},
u'orcid-internal': None,
u'orcid-preferences': None,
u'type': None},
u'relevancy-score': {u'value': 1.0}},
{u'orcid-profile': {u'client-type': None,
u'group-type': None,
u'orcid': None,
u'orcid-activities': {u'affiliations': None,
u'funding-list': None,
u'orcid-works': None},
u'orcid-bio': {u'applications': None,
u'biography': {u'value': u"Dr. Vikas Berry is a Chemical Engineering Professor at University of Illinois at Chicago. Previously, he was the William H. Honstead Professor of Chemical Engineering at Kansas State University. Dr. Berry has made pioneering contributions in the fields of graphene quantum materials and Bio/Nano technologies. As an engineering faculty, Dr. Berry has earned many honors, including the NSF-CAREER Award in 2011; the Sigma Xi Outstanding Junior Scientist Award in 2010; and the Big 12 Fellowship in 2009. In 2012, Dr. Berry received a chaired-professorship appointment (William H. Honstead Professorship), which lasted till his move to UIC. His work on graphene-biointerfaces received citation at the Manchester Museum of Science and Technology, and is considered as a nodal point in the evolution of graphene\u2019s biological applications. Dr. Berry is also a member of the editorial board of Scientific Reports (by Nature Publishing Group) and the Journal of Nanoscience Letters. Research results from Dr. Berry\u2019s group have been published in several high impact journals, including: Nature Communications, Nano Letters, Advanced Materials and Small; and have been featured in Nature, Science News, Discover, Chemical Engineering Progress, and Physics World amongst other places. Berry\u2019s research is funded by the NSF, DoD, and Industry. Dr. Berry received his bachelor's degree from the Indian Institute of Technology-Delhi, India, in 1999, followed by a master's degree from the University of Kansas in 2003, and a doctorate degree from Virginia Polytechnic Institute and State University in 2006.",
u'visibility': None},
u'contact-details': None,
u'delegation': None,
u'external-identifiers': None,
u'keywords': None,
u'personal-details': {u'credit-name': None,
u'family-name': {u'value': u'Berry'},
u'given-names': {u'value': u'Vikas'},
u'other-names': None},
u'researcher-urls': None,
u'scope': None},
u'orcid-deprecated': None,
u'orcid-history': None,
u'orcid-id': None,
u'orcid-identifier': {u'host': u'orcid.org',
u'path': u'0000-0002-1102-1996',
u'uri': u'http://orcid.org/0000-0002-1102-1996',
u'value': None},
u'orcid-internal': None,
u'orcid-preferences': None,
u'type': None},
u'relevancy-score': {u'value': 1.0}},
{u'orcid-profile': {u'client-type': None,
u'group-type': None,
u'orcid': None,
u'orcid-activities': {u'affiliations': None,
u'funding-list': None,
u'orcid-works': None},
u'orcid-bio': {u'applications': None,
u'biography': {u'value': u'Guido Carpinelli (M\u201992) received his degree in Electrical Engineering from the University of Naples (Italy) in 1978. He is currently professor in Energy Electrical Systems at University of Naples \u201cFederico II\u201d (Italy). His research interest concerns Power Quality and Power System Analysis. He is author of several papers in journal published by IEEE, IEE, IET and Elsevier. In addition, he has published a book on Power Quality Indices edited by J. Wiley and is co-author of Chapter 8 and 11 of a book on Time-varying waveform distortions published by J. Wiley. He participate in the IEEE and CIGRE working groups on power quality.',
u'visibility': None},
u'contact-details': None,
u'delegation': None,
u'external-identifiers': None,
u'keywords': None,
u'personal-details': {u'credit-name': None,
u'family-name': {u'value': u'Carpinelli'},
u'given-names': {u'value': u'Guido'},
u'other-names': None},
u'researcher-urls': None,
u'scope': None},
u'orcid-deprecated': None,
u'orcid-history': None,
u'orcid-id': None,
u'orcid-identifier': {u'host': u'orcid.org',
u'path': u'0000-0002-6235-3616',
u'uri': u'http://orcid.org/0000-0002-6235-3616',
u'value': None},
u'orcid-internal': None,
u'orcid-preferences': None,
u'type': None},
u'relevancy-score': {u'value': 1.0}},
{u'orcid-profile': {u'client-type': None,
u'group-type': None,
u'orcid': None,
u'orcid-activities': {u'affiliations': None,
u'funding-list': None,
u'orcid-works': None},
u'orcid-bio': {u'applications': None,
u'biography': None,
u'contact-details': {u'address': {u'country': {u'value': u'IN',
u'visibility': None}},
u'email': []},
u'delegation': None,
u'external-identifiers': None,
u'keywords': {u'keyword': [{u'value': u'Solar Cells, Water Splitting, Memory devices, Thin Films'}],
u'visibility': None},
u'personal-details': {u'credit-name': None,
u'family-name': {u'value': u'Singh'},
u'given-names': {u'value': u'Trilok'},
u'other-names': None},
u'researcher-urls': None,
u'scope': None},
u'orcid-deprecated': None,
u'orcid-history': None,
u'orcid-id': None,
u'orcid-identifier': {u'host': u'orcid.org',
u'path': u'0000-0003-4763-3780',
u'uri': u'http://orcid.org/0000-0003-4763-3780',
u'value': None},
u'orcid-internal': None,
u'orcid-preferences': None,
u'type': None},
u'relevancy-score': {u'value': 1.0}},
{u'orcid-profile': {u'client-type': None,
u'group-type': None,
u'orcid': None,
u'orcid-activities': {u'affiliations': None,
u'funding-list': None,
u'orcid-works': None},
u'orcid-bio': {u'applications': None,
u'biography': {u'value': u'', u'visibility': None},
u'contact-details': None,
u'delegation': None,
u'external-identifiers': None,
u'keywords': None,
u'personal-details': {u'credit-name': None,
u'family-name': {u'value': u'Miyairi'},
u'given-names': {u'value': u'Isao'},
u'other-names': None},
u'researcher-urls': None,
u'scope': None},
u'orcid-deprecated': None,
u'orcid-history': None,
u'orcid-id': None,
u'orcid-identifier': {u'host': u'orcid.org',
u'path': u'0000-0003-3886-9089',
u'uri': u'http://orcid.org/0000-0003-3886-9089',
u'value': None},
u'orcid-internal': None,
u'orcid-preferences': None,
u'type': None},
u'relevancy-score': {u'value': 1.0}},
{u'orcid-profile': {u'client-type': None,
u'group-type': None,
u'orcid': None,
u'orcid-activities': {u'affiliations': None,
u'funding-list': None,
u'orcid-works': None},
u'orcid-bio': {u'applications': None,
u'biography': {u'value': u'', u'visibility': None},
u'contact-details': None,
u'delegation': None,
u'external-identifiers': {u'external-identifier': [{u'external-id-common-name': {u'value': u'Scopus Author ID'},
u'external-id-orcid': None,
u'external-id-reference': {u'value': u'7403123825'},
u'external-id-source': {u'host': u'orcid.org',
u'path': u'0000-0002-5982-8983',
u'uri': u'http://orcid.org/0000-0002-5982-8983',
u'value': None},
u'external-id-url': {u'value': u'http://www.scopus.com/inward/authorDetails.url?authorID=7403123825&partnerID=MN8TOARS'},
u'orcid': None,
u'source': None}],
u'visibility': None},
u'keywords': None,
u'personal-details': {u'credit-name': None,
u'family-name': {u'value': u'Nishida'},
u'given-names': {u'value': u'Yuichiro'},
u'other-names': None},
u'researcher-urls': None,
u'scope': None},
u'orcid-deprecated': None,
u'orcid-history': None,
u'orcid-id': None,
u'orcid-identifier': {u'host': u'orcid.org',
u'path': u'0000-0003-2320-7234',
u'uri': u'http://orcid.org/0000-0003-2320-7234',
u'value': None},
u'orcid-internal': None,
u'orcid-preferences': None,
u'type': None},
u'relevancy-score': {u'value': 1.0}},
{u'orcid-profile': {u'client-type': None,
u'group-type': None,
u'orcid': None,
u'orcid-activities': {u'affiliations': None,
u'funding-list': None,
u'orcid-works': None},
u'orcid-bio': {u'applications': None,
u'biography': {u'value': u'', u'visibility': None},
u'contact-details': None,
u'delegation': None,
u'external-identifiers': {u'external-identifier': [{u'external-id-common-name': {u'value': u'ResearcherID'},
u'external-id-orcid': None,
u'external-id-reference': {u'value': u'I-3065-2015'},
u'external-id-source': {u'host': u'orcid.org',
u'path': u'0000-0001-7707-4137',
u'uri': u'http://orcid.org/0000-0001-7707-4137',
u'value': None},
u'external-id-url': {u'value': u'http://www.researcherid.com/rid/I-3065-2015'},
u'orcid': None,
u'source': None}],
u'visibility': None},
u'keywords': None,
u'personal-details': {u'credit-name': None,
u'family-name': {u'value': u'L\xf3pez Carmona'},
u'given-names': {u'value': u'Carmen Cristobalina'},
u'other-names': None},
u'researcher-urls': None,
u'scope': None},
u'orcid-deprecated': None,
u'orcid-history': None,
u'orcid-id': None,
u'orcid-identifier': {u'host': u'orcid.org',
u'path': u'0000-0002-8680-6763',
u'uri': u'http://orcid.org/0000-0002-8680-6763',
u'value': None},
u'orcid-internal': None,
u'orcid-preferences': None,
u'type': None},
u'relevancy-score': {u'value': 1.0}},
{u'orcid-profile': {u'client-type': None,
u'group-type': None,
u'orcid': None,
u'orcid-activities': {u'affiliations': None,
u'funding-list': None,
u'orcid-works': None},
u'orcid-bio': {u'applications': None,
u'biography': {u'value': u'', u'visibility': None},
u'contact-details': None,
u'delegation': None,
u'external-identifiers': None,
u'keywords': None,
u'personal-details': {u'credit-name': None,
u'family-name': {u'value': u'Maruyama'},
u'given-names': {u'value': u'Yasuhiko'},
u'other-names': None},
u'researcher-urls': None,
u'scope': None},
u'orcid-deprecated': None,
u'orcid-history': None,
u'orcid-id': None,
u'orcid-identifier': {u'host': u'orcid.org',
u'path': u'0000-0003-0269-7799',
u'uri': u'http://orcid.org/0000-0003-0269-7799',
u'value': None},
u'orcid-internal': None,
u'orcid-preferences': None,
u'type': None},
u'relevancy-score': {u'value': 1.0}},
{u'orcid-profile': {u'client-type': None,
u'group-type': None,
u'orcid': None,
u'orcid-activities': {u'affiliations': None,
u'funding-list': None,
u'orcid-works': None},
u'orcid-bio': {u'applications': None,
u'biography': {u'value': u'', u'visibility': None},
u'contact-details': None,
u'delegation': None,
u'external-identifiers': None,
u'keywords': None,
u'personal-details': {u'credit-name': None,
u'family-name': {u'value': u'TAN'},
u'given-names': {u'value': u'Weixian'},
u'other-names': None},
u'researcher-urls': None,
u'scope': None},
u'orcid-deprecated': None,
u'orcid-history': None,
u'orcid-id': None,
u'orcid-identifier': {u'host': u'orcid.org',
u'path': u'0000-0001-5526-6111',
u'uri': u'http://orcid.org/0000-0001-5526-6111',
u'value': None},
u'orcid-internal': None,
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